IL_9J1M_069

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CCGG*CG

Length

6 nucleotides

Bulged bases

9J1M|1|A|C|2072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_069 not in the Motif Atlas

Geometric match to IL_1U9S_005

Geometric discrepancy: 0.1471

The information below is about IL_1U9S_005

Detailed Annotation

Minor groove platform, major groove intercalation

Broad Annotation

Minor groove platform, major groove intercalation

Motif group

IL_55206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

10

Unit IDs

9J1M|1|A|C|2071
9J1M|1|A|C|2072
9J1M|1|A|G|2073
9J1M|1|A|G|2074
*
9J1M|1|A|C|2140
9J1M|1|A|G|2141

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2

Chain a

Small subunit ribosomal RNA; SSU rRNA