IL_9J1M_078

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

9J1M|1|A|C|2293, 9J1M|1|A|U|2851, 9J1M|1|A|A|2852

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_078 not in the Motif Atlas

Geometric match to IL_4WF9_079

Geometric discrepancy: 0.1033

The information below is about IL_4WF9_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80025.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

8

Unit IDs

9J1M|1|A|A|2292
9J1M|1|A|C|2293
9J1M|1|A|G|2294
*
9J1M|1|A|C|2850
9J1M|1|A|U|2851
9J1M|1|A|A|2852
9J1M|1|A|U|2853

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3

Chain S

Large ribosomal subunit protein uL22