IL_9J1M_090

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_090 not in the Motif Atlas

Geometric match to IL_3BNN_005

Geometric discrepancy: 0.0901

The information below is about IL_3BNN_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

78

Unit IDs

9J1M|1|A|C|2699
9J1M|1|A|U|2700
9J1M|1|A|U|2701
*
9J1M|1|A|A|2725
9J1M|1|A|U|2726
9J1M|1|A|G|2727

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

30S ribosomal protein THX

Chain M

Large ribosomal subunit protein uL16