IL_9J1M_097

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UUGAG*CAAGAUCAG

Length

14 nucleotides

Bulged bases

9J1M|1|A|C|3018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_097 not in the Motif Atlas

Geometric match to IL_9DFE_101

Geometric discrepancy: 0.0592

The information below is about IL_9DFE_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9J1M|1|A|U|2874
9J1M|1|A|U|2875
9J1M|1|A|G|2876
9J1M|1|A|A|2877
9J1M|1|A|G|2878
*
9J1M|1|A|C|3012
9J1M|1|A|A|3013
9J1M|1|A|A|3014
9J1M|1|A|G|3015
9J1M|1|A|A|3016
9J1M|1|A|U|3017
9J1M|1|A|C|3018
9J1M|1|A|A|3019
9J1M|1|A|G|3020

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain J

Large ribosomal subunit protein uL13