IL_9J1M_098

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_098 not in the Motif Atlas

Geometric match to IL_5J7L_346

Geometric discrepancy: 0.1011

The information below is about IL_5J7L_346

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.4

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9J1M|1|A|C|2890
9J1M|1|A|U|2891
9J1M|1|A|A|2892
9J1M|1|A|G|2893
9J1M|1|A|U|2894
9J1M|1|A|A|2895
9J1M|1|A|C|2896
*
9J1M|1|A|G|2901
9J1M|1|A|G|2902
9J1M|1|A|A|2903
9J1M|1|A|C|2904
9J1M|1|A|C|2905
9J1M|1|A|G|2906

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6