IL_9J1M_100

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGCAC*GAUAG

Length

10 nucleotides

Bulged bases

9J1M|1|A|C|2927, 9J1M|1|A|A|2928

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_100 not in the Motif Atlas

Geometric match to IL_4WF9_102

Geometric discrepancy: 0.2002

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9J1M|1|A|U|2925
9J1M|1|A|G|2926
9J1M|1|A|C|2927
9J1M|1|A|A|2928
9J1M|1|A|C|2929
*
9J1M|1|A|G|2956
9J1M|1|A|A|2957
9J1M|1|A|U|2958
9J1M|1|A|A|2959
9J1M|1|A|G|2960

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein bL17

Chain P

Large ribosomal subunit protein bL19