IL_9J1M_102

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAUAAC*GGAAAC

Length

12 nucleotides

Bulged bases

9J1M|1|A|A|3003

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_102 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.0896

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9J1M|1|A|G|2975
9J1M|1|A|A|2976
9J1M|1|A|U|2977
9J1M|1|A|A|2978
9J1M|1|A|A|2979
9J1M|1|A|C|2980
*
9J1M|1|A|G|3000
9J1M|1|A|G|3001
9J1M|1|A|A|3002
9J1M|1|A|A|3003
9J1M|1|A|A|3004
9J1M|1|A|C|3005

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL36

Chain G

Large ribosomal subunit protein uL6

Chain J

Large ribosomal subunit protein uL13