IL_9J1M_104

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAC*GAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_104 not in the Motif Atlas

Geometric match to IL_7A0S_100

Geometric discrepancy: 0.3104

The information below is about IL_7A0S_100

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_05502.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9J1M|1|A|G|3078
9J1M|1|A|A|3079
9J1M|1|A|C|3080
*
9J1M|1|A|G|3106
9J1M|1|A|A|3107
9J1M|1|A|A|3108
9J1M|1|A|C|3109

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain N

Large ribosomal subunit protein bL17

Chain P

Large ribosomal subunit protein bL19