IL_9J1M_105

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGGAAG*UGUAG

Length

11 nucleotides

Bulged bases

9J1M|1|A|U|3102

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_105 not in the Motif Atlas

Geometric match to IL_7A0S_101

Geometric discrepancy: 0.1754

The information below is about IL_7A0S_101

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48489.1

Basepair signature

cWW-tSH-L-tHH-L-cWW

Number of instances in this motif group

8

Unit IDs

9J1M|1|A|U|3082
9J1M|1|A|G|3083
9J1M|1|A|G|3084
9J1M|1|A|A|3085
9J1M|1|A|A|3086
9J1M|1|A|G|3087
*
9J1M|1|A|U|3100
9J1M|1|A|G|3101
9J1M|1|A|U|3102
9J1M|1|A|A|3103
9J1M|1|A|G|3104

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17

Chain P

Large ribosomal subunit protein bL19