IL_9J1M_123

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

9J1M|1|a|U|243, 9J1M|1|a|C|279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_123 not in the Motif Atlas

Geometric match to IL_5J7L_014

Geometric discrepancy: 0.156

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

9J1M|1|a|U|241
9J1M|1|a|A|242
9J1M|1|a|U|243
9J1M|1|a|C|244
9J1M|1|a|A|245
9J1M|1|a|G|246
*
9J1M|1|a|C|276
9J1M|1|a|G|277
9J1M|1|a|A|278
9J1M|1|a|C|279
9J1M|1|a|G|280
9J1M|1|a|A|281
9J1M|1|a|C|282
9J1M|1|a|G|283

Current chains

Chain a

16S rRNA

Nearby chains

Chain l

Small ribosomal subunit protein uS12

Chain q

Small ribosomal subunit protein uS17