3D structure

PDB id
9J1M (explore in PDB, NAKB, or RNA 3D Hub)
Description
KU13-bond Mycobacterium tuberculosis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CAC*GAGAAG
Length
9 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9J1M_130 not in the Motif Atlas
Geometric match to IL_5J7L_021
Geometric discrepancy: 0.2031
The information below is about IL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_33323.1
Basepair signature
cWW-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

9J1M|1|a|C|439
9J1M|1|a|A|440
9J1M|1|a|C|441
*
9J1M|1|a|G|483
9J1M|1|a|A|484
9J1M|1|a|G|485
9J1M|1|a|A|486
9J1M|1|a|A|487
9J1M|1|a|G|488

Current chains

Chain a
16S rRNA

Nearby chains

Chain d
Small ribosomal subunit protein uS4

Coloring options:


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