3D structure

PDB id
9J1M (explore in PDB, NAKB, or RNA 3D Hub)
Description
KU13-bond Mycobacterium tuberculosis 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
9J1M|1|a|A|523, 9J1M|1|a|U|525, 9J1M|1|a|A|526
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9J1M_135 not in the Motif Atlas
Geometric match to IL_8P9A_404
Geometric discrepancy: 0.1677
The information below is about IL_8P9A_404
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_52042.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

9J1M|1|a|G|506
9J1M|1|a|U|507
9J1M|1|a|G|508
9J1M|1|a|C|509
9J1M|1|a|C|510
9J1M|1|a|A|511
9J1M|1|a|G|512
*
9J1M|1|a|C|519
9J1M|1|a|G|520
9J1M|1|a|G|521
9J1M|1|a|U|522
9J1M|1|a|A|523
9J1M|1|a|A|524
9J1M|1|a|U|525
9J1M|1|a|A|526
9J1M|1|a|C|527

Current chains

Chain a
16S rRNA

Nearby chains

Chain c
Small ribosomal subunit protein uS3
Chain d
Small ribosomal subunit protein uS4
Chain l
Small ribosomal subunit protein uS12

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