IL_9J1M_135
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9J1M|1|a|A|523, 9J1M|1|a|U|525, 9J1M|1|a|A|526
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_135 not in the Motif Atlas
- Geometric match to IL_8P9A_404
- Geometric discrepancy: 0.1677
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9J1M|1|a|G|506
9J1M|1|a|U|507
9J1M|1|a|G|508
9J1M|1|a|C|509
9J1M|1|a|C|510
9J1M|1|a|A|511
9J1M|1|a|G|512
*
9J1M|1|a|C|519
9J1M|1|a|G|520
9J1M|1|a|G|521
9J1M|1|a|U|522
9J1M|1|a|A|523
9J1M|1|a|A|524
9J1M|1|a|U|525
9J1M|1|a|A|526
9J1M|1|a|C|527
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain c
- Small ribosomal subunit protein uS3
- Chain d
- Small ribosomal subunit protein uS4
- Chain l
- Small ribosomal subunit protein uS12
Coloring options: