IL_9J1M_148
3D structure
- PDB id
- 9J1M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- KU13-bond Mycobacterium tuberculosis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9J1M_148 not in the Motif Atlas
- Geometric match to IL_5J7L_038
- Geometric discrepancy: 0.0844
- The information below is about IL_5J7L_038
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.4
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 4
Unit IDs
9J1M|1|a|G|880
9J1M|1|a|G|881
9J1M|1|a|A|882
9J1M|1|a|G|883
9J1M|1|a|U|884
9J1M|1|a|A|885
9J1M|1|a|C|886
9J1M|1|a|G|887
*
9J1M|1|a|U|898
9J1M|1|a|A|899
9J1M|1|a|A|900
9J1M|1|a|A|901
9J1M|1|a|A|902
9J1M|1|a|C|903
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain l
- Small ribosomal subunit protein uS12
- Chain x
- Mitochondrial domain of uncharacterised function (DUF1713)
Coloring options: