IL_9J1M_168

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CGGAUC*GUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_168 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.1483

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9J1M|1|a|C|1295
9J1M|1|a|G|1296
9J1M|1|a|G|1297
9J1M|1|a|A|1298
9J1M|1|a|U|1299
9J1M|1|a|C|1300
*
9J1M|1|a|G|1321
9J1M|1|a|U|1322
9J1M|1|a|G|1323
9J1M|1|a|A|1324
9J1M|1|a|A|1325
9J1M|1|a|G|1326

Current chains

Chain a

16S rRNA

Nearby chains

Chain m

Small ribosomal subunit protein uS13