IL_9J1M_175

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UAAC*GGGA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_175 not in the Motif Atlas

Geometric match to IL_5LQT_002

Geometric discrepancy: 0.1599

The information below is about IL_5LQT_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

9J1M|1|a|U|1417
9J1M|1|a|A|1418
9J1M|1|a|A|1419
9J1M|1|a|C|1420
*
9J1M|1|a|G|1466
9J1M|1|a|G|1467
9J1M|1|a|G|1468
9J1M|1|a|A|1469

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain K

Large ribosomal subunit protein uL14