IL_9J1M_178

3D structure

PDB id

9J1M (explore in PDB, NAKB, or RNA 3D Hub)

Description

KU13-bond Mycobacterium tuberculosis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGGC*GAG

Length

7 nucleotides

Bulged bases

9J1M|1|a|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J1M_178 not in the Motif Atlas

Geometric match to IL_7ELQ_002

Geometric discrepancy: 0.2426

The information below is about IL_7ELQ_002

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

9J1M|1|a|U|1433
9J1M|1|a|G|1434
9J1M|1|a|G|1435
9J1M|1|a|C|1436
*
9J1M|1|a|G|1452
9J1M|1|a|A|1453
9J1M|1|a|G|1454

Current chains

Chain a

16S rRNA

Nearby chains

Chain P

Large ribosomal subunit protein bL19

Chain t

Small ribosomal subunit protein bS20