IL_9J3R_046

3D structure

PDB id

9J3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enterococcus faecalis ROOL RNA tetramer

Experimental method

ELECTRON MICROSCOPY

Resolution

4.72 Å

Loop

Sequence

AGAGAAA*UGUUUAACGAAAGAAGUCGGUACGAGUAGCUUAAU

Length

42 nucleotides

Bulged bases

9J3R|1|D|A|310, 9J3R|1|D|U|329, 9J3R|1|D|A|331, 9J3R|1|D|A|357, 9J3R|1|D|A|358

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9J3R|1|D|A|306
9J3R|1|D|G|307
9J3R|1|D|A|308
9J3R|1|D|G|309
9J3R|1|D|A|310
9J3R|1|D|A|311
9J3R|1|D|A|312
*
9J3R|1|D|U|325
9J3R|1|D|G|326
9J3R|1|D|U|327
9J3R|1|D|U|328
9J3R|1|D|U|329
9J3R|1|D|A|330
9J3R|1|D|A|331
9J3R|1|D|C|332
9J3R|1|D|G|333
9J3R|1|D|A|334
9J3R|1|D|A|335
9J3R|1|D|A|336
9J3R|1|D|G|337
9J3R|1|D|A|338
9J3R|1|D|A|339
9J3R|1|D|G|340
9J3R|1|D|U|341
9J3R|1|D|C|342
9J3R|1|D|G|343
9J3R|1|D|G|344
9J3R|1|D|U|345
9J3R|1|D|A|346
9J3R|1|D|C|347
9J3R|1|D|G|348
9J3R|1|D|A|349
9J3R|1|D|G|350
9J3R|1|D|U|351
9J3R|1|D|A|352
9J3R|1|D|G|353
9J3R|1|D|C|354
9J3R|1|D|U|355
9J3R|1|D|U|356
9J3R|1|D|A|357
9J3R|1|D|A|358
9J3R|1|D|U|359

Current chains

Chain D

RNA (580-MER)

Nearby chains

Chain C

ROOL RNA