9J3R Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_9J3R_014 | 1/B/228:234 | No text annotation | ||
| HL_9J3R_023 | 1/C/228:234 | No text annotation | ||
| HL_9J3R_032 | 1/D/228:234 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_9J3R_001 | tRNA anticodon loop | ||
| HL_9J3R_002 | GNRA | ||
| HL_9J3R_003 | GNRA | ||
| HL_9J3R_004 | No text annotation | ||
| HL_9J3R_005 | No text annotation | ||
| HL_9J3R_006 | No text annotation | ||
| HL_9J3R_007 | GNRA | ||
| HL_9J3R_008 | No text annotation | ||
| HL_9J3R_009 | No text annotation | ||
| HL_9J3R_010 | tRNA anticodon loop | ||
| HL_9J3R_011 | GNRA | ||
| HL_9J3R_012 | GNRA | ||
| HL_9J3R_013 | No text annotation | ||
| HL_9J3R_015 | No text annotation | ||
| HL_9J3R_016 | GNRA | ||
| HL_9J3R_017 | No text annotation | ||
| HL_9J3R_018 | No text annotation | ||
| HL_9J3R_019 | tRNA anticodon loop | ||
| HL_9J3R_020 | GNRA | ||
| HL_9J3R_021 | GNRA | ||
| HL_9J3R_022 | No text annotation | ||
| HL_9J3R_024 | No text annotation | ||
| HL_9J3R_025 | GNRA | ||
| HL_9J3R_026 | No text annotation | ||
| HL_9J3R_027 | No text annotation | ||
| HL_9J3R_028 | tRNA anticodon loop | ||
| HL_9J3R_029 | GNRA | ||
| HL_9J3R_030 | GNRA | ||
| HL_9J3R_031 | No text annotation | ||
| HL_9J3R_033 | No text annotation | ||
| HL_9J3R_034 | GNRA | ||
| HL_9J3R_035 | No text annotation | ||
| HL_9J3R_036 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_9J3R_001 | No text annotation | ||
| IL_9J3R_002 | No text annotation | ||
| IL_9J3R_003 | Isolated cWH basepair | ||
| IL_9J3R_004 | No text annotation | ||
| IL_9J3R_005 | Quadruple sheared | ||
| IL_9J3R_006 | No text annotation | ||
| IL_9J3R_007 | No text annotation | ||
| IL_9J3R_008 | No text annotation | ||
| IL_9J3R_009 | No text annotation | ||
| IL_9J3R_010 | No text annotation | ||
| IL_9J3R_011 | Single bulged G | ||
| IL_9J3R_012 | No text annotation | ||
| IL_9J3R_013 | No text annotation | ||
| IL_9J3R_014 | No text annotation | ||
| IL_9J3R_015 | Isolated cWH basepair | ||
| IL_9J3R_016 | No text annotation | ||
| IL_9J3R_017 | Quadruple sheared | ||
| IL_9J3R_018 | No text annotation | ||
| IL_9J3R_019 | No text annotation | ||
| IL_9J3R_020 | No text annotation | ||
| IL_9J3R_021 | No text annotation | ||
| IL_9J3R_022 | No text annotation | ||
| IL_9J3R_023 | Single bulged G | ||
| IL_9J3R_024 | No text annotation | ||
| IL_9J3R_025 | No text annotation | ||
| IL_9J3R_026 | No text annotation | ||
| IL_9J3R_027 | Isolated cWH basepair | ||
| IL_9J3R_028 | No text annotation | ||
| IL_9J3R_029 | Quadruple sheared | ||
| IL_9J3R_030 | No text annotation | ||
| IL_9J3R_031 | No text annotation | ||
| IL_9J3R_032 | No text annotation | ||
| IL_9J3R_033 | No text annotation | ||
| IL_9J3R_034 | No text annotation | ||
| IL_9J3R_035 | Single bulged G | ||
| IL_9J3R_036 | No text annotation | ||
| IL_9J3R_037 | No text annotation | ||
| IL_9J3R_038 | No text annotation | ||
| IL_9J3R_039 | Isolated cWH basepair | ||
| IL_9J3R_040 | No text annotation | ||
| IL_9J3R_041 | Quadruple sheared | ||
| IL_9J3R_042 | No text annotation | ||
| IL_9J3R_043 | No text annotation | ||
| IL_9J3R_044 | No text annotation | ||
| IL_9J3R_045 | No text annotation | ||
| IL_9J3R_046 | No text annotation | ||
| IL_9J3R_047 | Single bulged G | ||
| IL_9J3R_048 | No text annotation |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_9J3R_001 | No text annotation | ||
| J3_9J3R_002 | No text annotation | ||
| J3_9J3R_003 | No text annotation | ||
| J3_9J3R_004 | No text annotation | ||
| J4_9J3R_001 | No text annotation | ||
| J4_9J3R_002 | No text annotation | ||
| J4_9J3R_003 | No text annotation | ||
| J4_9J3R_004 | No text annotation | ||
| J5_9J3R_001 | No text annotation | ||
| J5_9J3R_002 | No text annotation | ||
| J5_9J3R_003 | No text annotation | ||
| J5_9J3R_004 | No text annotation |
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