IL_9J3T_033

3D structure

PDB id

9J3T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enterococcus faecalis ROOL RNA octamer

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGGAAU*AGGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9J3T_033 not in the Motif Atlas

Geometric match to IL_3R9W_001

Geometric discrepancy: 0.2688

The information below is about IL_3R9W_001

Detailed Annotation

Quadruple sheared

Broad Annotation

Quadruple sheared

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9J3T|1|C|U|175
9J3T|1|C|G|176
9J3T|1|C|G|177
9J3T|1|C|A|178
9J3T|1|C|A|179
9J3T|1|C|U|180
*
9J3T|1|C|A|541
9J3T|1|C|G|542
9J3T|1|C|G|543
9J3T|1|C|A|544
9J3T|1|C|A|545
9J3T|1|C|G|546

Current chains

Chain C

RNA (580-MER)

Nearby chains