IL_9JMK_007

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JMK_007 not in the Motif Atlas

Geometric match to IL_8B0X_071

Geometric discrepancy: 0.1535

The information below is about IL_8B0X_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9JMK|1|A|C|239
9JMK|1|A|C|240
9JMK|1|A|A|241
9JMK|1|A|G|242
9JMK|1|A|U|243
9JMK|1|A|A|244
9JMK|1|A|G|245
*
9JMK|1|A|C|253
9JMK|1|A|G|254
9JMK|1|A|A|255
9JMK|1|A|A|256
9JMK|1|A|C|257
9JMK|1|A|G|258

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15