IL_9JMK_035

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

9JMK|1|A|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JMK_035 not in the Motif Atlas

Geometric match to IL_9DFE_045

Geometric discrepancy: 0.3375

The information below is about IL_9DFE_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.5

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9JMK|1|A|G|1202
9JMK|1|A|U|1203
9JMK|1|A|A|1204
9JMK|1|A|A|1205
9JMK|1|A|G|1206
*
9JMK|1|A|U|1240
9JMK|1|A|A|1241
9JMK|1|A|U|1242
9JMK|1|A|C|1243

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15