IL_9JMK_043

3D structure

PDB id

9JMK (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S Ribosomal Subunit precursor state III

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAAG*CUAAG

Length

10 nucleotides

Bulged bases

9JMK|1|A|A|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JMK_043 not in the Motif Atlas

Homologous match to IL_7A0S_051

Geometric discrepancy: 0.4542

The information below is about IL_7A0S_051

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.1

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

22

Unit IDs

9JMK|1|A|C|1417
9JMK|1|A|G|1418
9JMK|1|A|A|1419
9JMK|1|A|A|1420
9JMK|1|A|G|1421
*
9JMK|1|A|C|1577
9JMK|1|A|U|1578
9JMK|1|A|A|1579
9JMK|1|A|A|1580
9JMK|1|A|G|1581

Current chains

Chain A

23S ribosomal RNA

Nearby chains