IL_9JNS_006

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JNS_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.2344

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9JNS|1|A|G|188
9JNS|1|A|G|189
9JNS|1|A|A|190
9JNS|1|A|A|191
9JNS|1|A|C|192
9JNS|1|A|U|193
9JNS|1|A|G|194
*
9JNS|1|A|C|201
9JNS|1|A|U|202
9JNS|1|A|A|203
9JNS|1|A|A|204
9JNS|1|A|G|205
9JNS|1|A|U|206
9JNS|1|A|A|207
9JNS|1|A|C|208

Current chains

Chain A

23S ribosomal RNA

Nearby chains