IL_9JNS_007

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JNS_007 not in the Motif Atlas

Geometric match to IL_1NBS_007

Geometric discrepancy: 0.1555

The information below is about IL_1NBS_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9JNS|1|A|C|239
9JNS|1|A|C|240
9JNS|1|A|A|241
9JNS|1|A|G|242
9JNS|1|A|U|243
9JNS|1|A|A|244
9JNS|1|A|G|245
*
9JNS|1|A|C|253
9JNS|1|A|G|254
9JNS|1|A|A|255
9JNS|1|A|A|256
9JNS|1|A|C|257
9JNS|1|A|G|258

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15