IL_9JNS_046

3D structure

PDB id

9JNS (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9JNS|1|A|A|2765

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JNS_046 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.289

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9JNS|1|A|G|2737
9JNS|1|A|A|2738
9JNS|1|A|U|2739
9JNS|1|A|A|2740
9JNS|1|A|A|2741
9JNS|1|A|G|2742
*
9JNS|1|A|C|2762
9JNS|1|A|G|2763
9JNS|1|A|A|2764
9JNS|1|A|A|2765
9JNS|1|A|A|2766
9JNS|1|A|C|2767

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

rRNA adenine N-6-methyltransferase

Chain J

50S ribosomal protein L13