IL_9JPM_019

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPM_019 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.0928

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9JPM|1|A|U|409
9JPM|1|A|G|410
9JPM|1|A|A|411
9JPM|1|A|A|412
9JPM|1|A|G|413
9JPM|1|A|A|414
9JPM|1|A|A|415
9JPM|1|A|G|416
*
9JPM|1|A|U|427
9JPM|1|A|G|428
9JPM|1|A|U|429
9JPM|1|A|A|430
9JPM|1|A|A|431
9JPM|1|A|A|432
9JPM|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4