IL_9JPM_075
3D structure
- PDB id
- 9JPM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 9JPM|1|a|A|504, 9JPM|1|a|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9JPM_075 not in the Motif Atlas
- Geometric match to IL_8B0X_075
- Geometric discrepancy: 0.0477
- The information below is about IL_8B0X_075
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_44923.2
- Basepair signature
- cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 10
Unit IDs
9JPM|1|a|G|481
9JPM|1|a|A|482
9JPM|1|a|A|483
9JPM|1|a|C|484
*
9JPM|1|a|G|496
9JPM|1|a|A|497
9JPM|1|a|G|498
9JPM|1|a|U|499
9JPM|1|a|G|500
9JPM|1|a|A|501
9JPM|1|a|A|502
9JPM|1|a|A|503
9JPM|1|a|A|504
9JPM|1|a|A|505
9JPM|1|a|G|506
9JPM|1|a|A|507
9JPM|1|a|A|508
9JPM|1|a|C|509
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain r
- 50S ribosomal protein L22
- Chain t
- 50S ribosomal protein L24
Coloring options: