IL_9JPM_108
3D structure
- PDB id
- 9JPM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- AUAAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9JPM_108 not in the Motif Atlas
- Homologous match to IL_7A0S_045
- Geometric discrepancy: 0.1226
- The information below is about IL_7A0S_045
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.4
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9JPM|1|a|A|1262
9JPM|1|a|U|1263
9JPM|1|a|A|1264
9JPM|1|a|A|1265
9JPM|1|a|G|1266
9JPM|1|a|U|1267
9JPM|1|a|A|1268
9JPM|1|a|A|1269
*
9JPM|1|a|U|2011
9JPM|1|a|G|2012
9JPM|1|a|A|2013
9JPM|1|a|A|2014
9JPM|1|a|A|2015
9JPM|1|a|U|2016
9JPM|1|a|U|2017
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain e
- 50S ribosomal protein L4
- Chain r
- 50S ribosomal protein L22
- Chain z
- 50S ribosomal protein L32
Coloring options: