IL_9JPM_112

3D structure

PDB id

9JPM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.43 Å

Loop

Sequence

CGAGG*CGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPM_112 not in the Motif Atlas

Homologous match to IL_7A0S_049

Geometric discrepancy: 0.2434

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9JPM|1|a|C|1357
9JPM|1|a|G|1358
9JPM|1|a|A|1359
9JPM|1|a|G|1360
9JPM|1|a|G|1361
*
9JPM|1|a|C|1370
9JPM|1|a|G|1371
9JPM|1|a|U|1372
9JPM|1|a|A|1373
9JPM|1|a|G|1374

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2

Chain w

50S ribosomal protein L28