IL_9JPM_155
3D structure
- PDB id
- 9JPM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.43 Å
Loop
- Sequence
- CCAAG*CGACG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9JPM_155 not in the Motif Atlas
- Homologous match to IL_7A0S_087
- Geometric discrepancy: 0.1588
- The information below is about IL_7A0S_087
- Detailed Annotation
- Double sheared with non-canonical cWW
- Broad Annotation
- Double sheared
- Motif group
- IL_87767.3
- Basepair signature
- cWW-L-R-tSH-tHS-cWW
- Number of instances in this motif group
- 18
Unit IDs
9JPM|1|a|C|2466
9JPM|1|a|C|2467
9JPM|1|a|A|2468
9JPM|1|a|A|2469
9JPM|1|a|G|2470
*
9JPM|1|a|C|2480
9JPM|1|a|G|2481
9JPM|1|a|A|2482
9JPM|1|a|C|2483
9JPM|1|a|G|2484
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain V
- Transfer RNA; tRNA
- Chain l
- 50S ribosomal protein L16
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