IL_9JPO_020

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAG*CAGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_020 not in the Motif Atlas

Geometric match to IL_8B0X_020

Geometric discrepancy: 0.112

The information below is about IL_8B0X_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02111.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9JPO|1|A|C|440
9JPO|1|A|A|441
9JPO|1|A|G|442
*
9JPO|1|A|C|492
9JPO|1|A|A|493
9JPO|1|A|G|494
9JPO|1|A|A|495
9JPO|1|A|A|496
9JPO|1|A|G|497

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4