IL_9JPO_022

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_022 not in the Motif Atlas

Homologous match to IL_6CZR_406

Geometric discrepancy: 0.565

The information below is about IL_6CZR_406

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_26564.1

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9JPO|1|A|G|450
9JPO|1|A|A|451
9JPO|1|A|A|452
9JPO|1|A|G|453
9JPO|1|A|G|454
9JPO|1|A|G|455
*
9JPO|1|A|C|477
9JPO|1|A|A|478
9JPO|1|A|U|479
9JPO|1|A|U|480
9JPO|1|A|G|481
9JPO|1|A|A|482
9JPO|1|A|C|483

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16