IL_9JPO_025

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9JPO|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_025 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1161

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9JPO|1|A|C|569
9JPO|1|A|G|570
9JPO|1|A|U|571
9JPO|1|A|A|572
9JPO|1|A|A|573
9JPO|1|A|A|574
9JPO|1|A|G|575
*
9JPO|1|A|C|880
9JPO|1|A|G|881

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

30S ribosomal protein S12

Chain Q

30S ribosomal protein S17