IL_9JPO_051

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CAGC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_051 not in the Motif Atlas

Geometric match to IL_8B0X_051

Geometric discrepancy: 0.1901

The information below is about IL_8B0X_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87975.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

10

Unit IDs

9JPO|1|A|C|1129
9JPO|1|A|A|1130
9JPO|1|A|G|1131
9JPO|1|A|C|1132
*
9JPO|1|A|G|1142
9JPO|1|A|G|1143

Current chains

Chain A

16S rRNA

Nearby chains

Chain I

30S ribosomal protein S9