IL_9JPO_081

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9JPO|1|a|G|801, 9JPO|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_081 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1163

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

9JPO|1|a|G|674
9JPO|1|a|A|675
9JPO|1|a|A|676
9JPO|1|a|A|677
9JPO|1|a|C|678
*
9JPO|1|a|G|799
9JPO|1|a|A|800
9JPO|1|a|G|801
9JPO|1|a|A|802
9JPO|1|a|U|803
9JPO|1|a|A|804
9JPO|1|a|G|805
9JPO|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain k

50S ribosomal protein L15