IL_9JPO_102
3D structure
- PDB id
- 9JPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.18 Å
Loop
- Sequence
- GGGAAAC*GGAAGAUGUAACGGGGC
- Length
- 24 nucleotides
- Bulged bases
- 9JPO|1|a|A|1127, 9JPO|1|a|U|1130
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9JPO_102 not in the Motif Atlas
- Geometric match to IL_8B0X_101
- Geometric discrepancy: 0.0646
- The information below is about IL_8B0X_101
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_50715.4
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L
- Number of instances in this motif group
- 4
Unit IDs
9JPO|1|a|G|1024
9JPO|1|a|G|1025
9JPO|1|a|G|1026
9JPO|1|a|A|1027
9JPO|1|a|A|1028
9JPO|1|a|A|1029
9JPO|1|a|C|1030
*
9JPO|1|a|G|1124
9JPO|1|a|G|1125
9JPO|1|a|A|1126
9JPO|1|a|A|1127
9JPO|1|a|G|1128
9JPO|1|a|A|1129
9JPO|1|a|U|1130
9JPO|1|a|G|1131
9JPO|1|a|U|1132
9JPO|1|a|A|1133
9JPO|1|a|A|1134
9JPO|1|a|C|1135
9JPO|1|a|G|1136
9JPO|1|a|G|1137
9JPO|1|a|G|1138
9JPO|1|a|G|1139
9JPO|1|a|C|1140
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L36
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain d
- 50S ribosomal protein L3
- Chain i
- 50S ribosomal protein L13
- Chain l
- 50S ribosomal protein L16
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