IL_9JPO_105

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CCCAGACAGC*GUCGAG

Length

16 nucleotides

Bulged bases

9JPO|1|a|C|1045, 9JPO|1|a|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_105 not in the Motif Atlas

Homologous match to IL_8B0X_104

Geometric discrepancy: 0.5981

The information below is about IL_8B0X_104

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_99692.4

Basepair signature

cWW-tSS-tSH-L-R-R-L-cWW-L-L

Number of instances in this motif group

5

Unit IDs

9JPO|1|a|C|1043
9JPO|1|a|C|1044
9JPO|1|a|C|1045
9JPO|1|a|A|1046
9JPO|1|a|G|1047
9JPO|1|a|A|1048
9JPO|1|a|C|1049
9JPO|1|a|A|1050
9JPO|1|a|G|1051
9JPO|1|a|C|1052
*
9JPO|1|a|G|1107
9JPO|1|a|U|1108
9JPO|1|a|C|1109
9JPO|1|a|G|1110
9JPO|1|a|A|1111
9JPO|1|a|G|1112

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6