IL_9JPO_109

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_109 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.1171

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.4

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9JPO|1|a|A|1262
9JPO|1|a|U|1263
9JPO|1|a|A|1264
9JPO|1|a|A|1265
9JPO|1|a|G|1266
9JPO|1|a|U|1267
9JPO|1|a|A|1268
9JPO|1|a|A|1269
*
9JPO|1|a|U|2011
9JPO|1|a|G|2012
9JPO|1|a|A|2013
9JPO|1|a|A|2014
9JPO|1|a|A|2015
9JPO|1|a|U|2016
9JPO|1|a|U|2017

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

50S ribosomal protein L4

Chain r

50S ribosomal protein L22

Chain z

50S ribosomal protein L32