IL_9JPO_134

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9JPO|1|a|A|1801, 9JPO|1|a|C|1816, 9JPO|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_134 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0892

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9JPO|1|a|U|1798
9JPO|1|a|G|1799
9JPO|1|a|C|1800
9JPO|1|a|A|1801
9JPO|1|a|A|1802
9JPO|1|a|A|1803
9JPO|1|a|C|1804
*
9JPO|1|a|G|1813
9JPO|1|a|G|1814
9JPO|1|a|A|1815
9JPO|1|a|C|1816
9JPO|1|a|G|1817
9JPO|1|a|U|1818
9JPO|1|a|A|1819
9JPO|1|a|U|1820
9JPO|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2