IL_9JPO_149

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

AAU*AGGUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_149 not in the Motif Atlas

Geometric match to IL_8B0X_147

Geometric discrepancy: 0.0877

The information below is about IL_8B0X_147

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14250.2

Basepair signature

cWW-tSH-L-cWW-L

Number of instances in this motif group

11

Unit IDs

9JPO|1|a|A|2297
9JPO|1|a|A|2298
9JPO|1|a|U|2299
*
9JPO|1|a|A|2317
9JPO|1|a|G|2318
9JPO|1|a|G|2319
9JPO|1|a|U|2320
9JPO|1|a|U|2321

Current chains

Chain a

23S rRNA

Nearby chains

Chain b

5S ribosomal RNA; 5S rRNA

Chain f

50S ribosomal protein L5