IL_9JPO_163

3D structure

PDB id

9JPO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPO_163 not in the Motif Atlas

Homologous match to IL_7A0S_094

Geometric discrepancy: 0.0849

The information below is about IL_7A0S_094

Detailed Annotation

Sarcin-Ricin target in LSU H95; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_16458.6

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9JPO|1|a|C|2652
9JPO|1|a|U|2653
9JPO|1|a|A|2654
9JPO|1|a|G|2655
9JPO|1|a|U|2656
9JPO|1|a|A|2657
9JPO|1|a|C|2658
*
9JPO|1|a|G|2663
9JPO|1|a|G|2664
9JPO|1|a|A|2665
9JPO|1|a|C|2666
9JPO|1|a|C|2667
9JPO|1|a|G|2668

Current chains

Chain a

23S rRNA

Nearby chains

Chain g

50S ribosomal protein L6