IL_9JPP_019

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPP_019 not in the Motif Atlas

Geometric match to IL_8B0X_019

Geometric discrepancy: 0.0782

The information below is about IL_8B0X_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9JPP|1|A|U|409
9JPP|1|A|G|410
9JPP|1|A|A|411
9JPP|1|A|A|412
9JPP|1|A|G|413
9JPP|1|A|A|414
9JPP|1|A|A|415
9JPP|1|A|G|416
*
9JPP|1|A|U|427
9JPP|1|A|G|428
9JPP|1|A|U|429
9JPP|1|A|A|430
9JPP|1|A|A|431
9JPP|1|A|A|432
9JPP|1|A|G|433

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4