IL_9JPP_074

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPP_074 not in the Motif Atlas

Geometric match to IL_8B0X_074

Geometric discrepancy: 0.0746

The information below is about IL_8B0X_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76658.1

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

4

Unit IDs

9JPP|1|a|U|293
9JPP|1|a|A|294
9JPP|1|a|G|295
*
9JPP|1|a|C|343
9JPP|1|a|A|344
9JPP|1|a|A|345
9JPP|1|a|A|346
9JPP|1|a|A|347

Current chains

Chain a

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L24