IL_9JPP_169

3D structure

PDB id

9JPP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5s2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JPP_169 not in the Motif Atlas

Geometric match to IL_8B0X_169

Geometric discrepancy: 0.0499

The information below is about IL_8B0X_169

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60988.3

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

9

Unit IDs

9JPP|1|a|G|2843
9JPP|1|a|G|2844
9JPP|1|a|U|2845
9JPP|1|a|G|2846
*
9JPP|1|a|C|2870
9JPP|1|a|U|2871
9JPP|1|a|A|2872
9JPP|1|a|A|2873
9JPP|1|a|C|2874

Current chains

Chain a

23S rRNA

Nearby chains

Chain m

50S ribosomal protein L17

Chain o

50S ribosomal protein L19