IL_9JQ2_133

3D structure

PDB id

9JQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacterial Ribosome with human tRNA Lys(mcm5h2U34) and mRNA(AAG)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9JQ2|1|a|A|1801, 9JQ2|1|a|C|1816, 9JQ2|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JQ2_133 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1028

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9JQ2|1|a|U|1798
9JQ2|1|a|G|1799
9JQ2|1|a|C|1800
9JQ2|1|a|A|1801
9JQ2|1|a|A|1802
9JQ2|1|a|A|1803
9JQ2|1|a|C|1804
*
9JQ2|1|a|G|1813
9JQ2|1|a|G|1814
9JQ2|1|a|A|1815
9JQ2|1|a|C|1816
9JQ2|1|a|G|1817
9JQ2|1|a|U|1818
9JQ2|1|a|A|1819
9JQ2|1|a|U|1820
9JQ2|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2