IL_9JSR_006

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAACUG*CUAAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JSR_006 not in the Motif Atlas

Homologous match to IL_7A0S_006

Geometric discrepancy: 0.2094

The information below is about IL_7A0S_006

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9JSR|1|A|G|188
9JSR|1|A|G|189
9JSR|1|A|A|190
9JSR|1|A|A|191
9JSR|1|A|C|192
9JSR|1|A|U|193
9JSR|1|A|G|194
*
9JSR|1|A|C|201
9JSR|1|A|U|202
9JSR|1|A|A|203
9JSR|1|A|A|204
9JSR|1|A|G|205
9JSR|1|A|U|206
9JSR|1|A|A|207
9JSR|1|A|C|208

Current chains

Chain A

23S Ribosomal RNA

Nearby chains