IL_9JSR_015

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9JSR|1|A|G|801, 9JSR|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JSR_015 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.4301

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.1

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

10

Unit IDs

9JSR|1|A|G|674
9JSR|1|A|A|675
9JSR|1|A|A|676
9JSR|1|A|A|677
9JSR|1|A|C|678
*
9JSR|1|A|G|799
9JSR|1|A|A|800
9JSR|1|A|G|801
9JSR|1|A|A|802
9JSR|1|A|U|803
9JSR|1|A|A|804
9JSR|1|A|G|805
9JSR|1|A|C|806

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4