IL_9JSR_029

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9JSR|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JSR_029 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.2029

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9JSR|1|A|C|1208
9JSR|1|A|U|1209
9JSR|1|A|G|1210
9JSR|1|A|C|1211
9JSR|1|A|G|1212
9JSR|1|A|A|1213
9JSR|1|A|A|1214
9JSR|1|A|G|1215
*
9JSR|1|A|U|1234
9JSR|1|A|G|1235
9JSR|1|A|G|1236
9JSR|1|A|A|1237
9JSR|1|A|G|1238

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20