IL_9JSR_030

3D structure

PDB id

9JSR (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S precursor - Erm complex (C-I)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUAAGUAA*UGAAAUU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9JSR_030 not in the Motif Atlas

Homologous match to IL_7A0S_045

Geometric discrepancy: 0.1776

The information below is about IL_7A0S_045

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.3

Basepair signature

cWW-cWW-tSH-cSH-R-tWH-tHS-cWW

Number of instances in this motif group

20

Unit IDs

9JSR|1|A|A|1262
9JSR|1|A|U|1263
9JSR|1|A|A|1264
9JSR|1|A|A|1265
9JSR|1|A|G|1266
9JSR|1|A|U|1267
9JSR|1|A|A|1268
9JSR|1|A|A|1269
*
9JSR|1|A|U|2011
9JSR|1|A|G|2012
9JSR|1|A|A|2013
9JSR|1|A|A|2014
9JSR|1|A|A|2015
9JSR|1|A|U|2016
9JSR|1|A|U|2017

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain S

50S ribosomal protein L22