IL_9K0Z_024
3D structure
- PDB id
- 9K0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- EF-G2 bound 70S ribosome complex of M. smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9K0Z|1|A|A|512, 9K0Z|1|A|U|514, 9K0Z|1|A|A|515
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9K0Z_024 not in the Motif Atlas
- Geometric match to IL_8P9A_404
- Geometric discrepancy: 0.2594
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9K0Z|1|A|G|495
9K0Z|1|A|U|496
9K0Z|1|A|G|497
9K0Z|1|A|C|498
9K0Z|1|A|C|499
9K0Z|1|A|A|500
9K0Z|1|A|G|501
*
9K0Z|1|A|C|508
9K0Z|1|A|G|509
9K0Z|1|A|G|510
9K0Z|1|A|U|511
9K0Z|1|A|A|512
9K0Z|1|A|A|513
9K0Z|1|A|U|514
9K0Z|1|A|A|515
9K0Z|1|A|C|516
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 4
- mRNA fragment
- Chain 7
- Translation elongation factor EF-G
- Chain C
- Small ribosomal subunit protein uS3
- Chain D
- Small ribosomal subunit protein uS4
- Chain L
- Small ribosomal subunit protein uS12
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